I was correct, there are different ECUs for the different transmissions. I have no idea if one will run the other, but here are part numbers.
MT - 37820-PT6-A12
AT - 37820-PT6-A53
Interesting enough, the AT one is $85 more than the MT.
MT - 37820-PT6-A12
AT - 37820-PT6-A53
Interesting enough, the AT one is $85 more than the MT.





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